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Last updated: 17 December 2024

GABRB3 Mutations

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GABRB3 mutationsSevere Epileptic Encephalopathies

1. Introduction

  • GABRB3 gene is a recently identified gene located in 15q12 chromosome and encodes encodes the β3-subunit of the GABA-A receptor, a ligand-gated chloride channel.
  • The gene is believed to share a role in inhibitory GABAergic synapses, GABA iron-gated channel function, and possible cellular response to histamine.
  • The β3 subunit is expressed in cerebral grey matter, thalami, hippocampi, and cerebellum, among other structures.
  • GABA-A receptors mediate fast inhibitory neurotransmission in the central nervous system (CNS).
  • Faulty GABRB3 function is linked to several neurological disorders and clinical syndromes. However, the spectrum of such disorders is not yet well known
  • Mutations in GABRB3 are emerging as a significant cause of early infantile epileptic encephalopathy (EIEE), a severe developmental and epileptic encephalopathy.

2. GABA-A Receptor: Structure and Function

  • Composition: Pentameric assembly of subunits (α, β, γ, δ, etc.). Typical GABA-A receptors have:
    • 2 α-subunits
    • 2 β-subunits (e.g., GABRB3)
    • 1 γ-subunit
  • Ion Channel:
    • Formed by transmembrane domains M1–M4 of each subunit.
    • The M2 domain lines the ion channel pore.
  • Function:
    • GABA binding leads to chloride influx (hyperpolarization → neuronal inhibition).
    • In immature neurons, GABA causes chloride efflux (depolarization → excitation) due to NKCC1 transporter activity​

3. Clinical Relevance of GABRB3

  • Associated Disorders:
    1. Early infantile epileptic encephalopathy (EIEE):
      • Severe seizure disorders starting <10 months of age.
      • Variable EEG abnormalities, neurodevelopmental delays.
    2. Angelman Syndrome:
      • Chromosomal deletions involving 15q11.2-q12 (where GABRB3 is located).
      • Clinical features: Epilepsy, intellectual disability, ataxia, and happy demeanor.
    3. Childhood Absence Epilepsy:
      • Polymorphisms in GABRB3 reduce receptor transcriptional activity.
    4. Autism Spectrum Disorder (ASD):
      • GABRB3 variants are implicated in ASD pathogenesis.

4. GABRB3 Mutations and Epilepsy

  • Mutation Characteristics:
    • Typically de novo missense mutations in highly conserved regions.
    • Most mutations occur in:
      • M2 transmembrane domain (critical for ion flux).
      • Extracellular loops (e.g., near the amino terminus)​
  • Reported Mutations:
    • Mutations affect receptor gating, chloride conductance, and cellular trafficking​
    • Table of key mutations (Papandreou A et al 2016):
MutationAge at OnsetSeizure TypesEEG FindingsOther Features
p.Asn110Asp 5 months Infantile spasms Hypsarrhythmia None
p.Asn120Asp 10 months Infantile spasms Generalized 2 Hz bursts ADHD, impulsivity
p.Thr287Ile 3 months Multiple seizure types Generalized fast activity Severe hypotonia, dysmorphia
p.Tyr302Cys 10 months Focal dyscognitive Slow, left-temporal focus Behavioral arrest, severe ID

Key Point: The p.Thr287Ile mutation, located in the M2 domain, impacts ion pore function and likely reduces chloride flux, causing hyperexcitability​


5. Pathophysiology

  • GABRB3 mutations disrupt the function of GABA-A receptors by:

    1. Impaired chloride ion flow: Decreased inhibitory signaling → epileptogenesis.
    2. Hyperglycosylation: Abnormal protein folding and trafficking​
    3. Haploinsufficiency: Reduced expression leads to loss of receptor function.
  • Mechanisms of Hyperexcitability:

    • Reduced inhibition in mature neurons.
    • Increased excitation in immature neurons due to chloride efflux.

6. Phenotypic Spectrum of GABRB3 Mutations

GABRB3 mutations demonstrate a wide phenotypic range, including:

  1. Febrile Seizures (FS): Simple FS to genetic epilepsy with FS plus (GEFS+).
  2. Generalized Epilepsies:
    • Early-onset absence epilepsy (EOAE).
    • Myoclonic-atonic epilepsy (MAE).
  3. Severe Epileptic Encephalopathies (EEs):

Age at Onset:

  • Median onset at 8.5 months (range: 1 day–36 months)​

7. Clinical Findings in GABRB3 Patients

  • Seizure Types:
    • Febrile seizures, focal seizures, generalized tonic-clonic seizures (GTCS).
    • Infantile spasms (IS), myoclonic seizures, atonic seizures, and tonic seizures.
  • Intellectual Disability (ID):
    • Mild to severe ID is common in EEs.
    • Patients with GEFS+ or EOAE may have normal intellect.
  • Behavioral Features:
    • Hyperactivity, aggression, and autistic traits occur in ~36% of cases.
  • MRI Abnormalities:
    • Hypomyelination.
    • Brain atrophy.
    • Heterotopias (e.g., bifrontal heterotopia in multifocal epilepsy cases).

8. Mutation Characteristics

  1. Mutation Types:

    • Missense mutations dominate.
    • Truncating mutations and duplications are rare.
  2. Recurrent Mutations:

    • Some mutations are recurrent across unrelated patients, such as:
      • p.Y302C: Associated with focal epilepsy and severe LGS.
      • p.R232Q: Linked to treatable multifocal epilepsy with moderate ID.
    • These recurrent sites suggest a hotspot for pathogenicity​
  3. Inheritance:

    • ~64% are de novo mutations.
    • A smaller percentage are inherited in an autosomal dominant fashion.
    • Parental mosaicism may contribute to familial cases​

9. Functional Consequences of GABRB3 Mutations

Mutations in GABRB3 impair receptor function via:

  1. Loss of GABA-Evoked Current:
    • Mutations like p.V37G, p.Y184H, and p.Y302C significantly reduce GABA-induced currents.
  2. Reduced GABA Sensitivity:
    • Mutations such as p.Y302C and p.Y184H cause a rightward shift in dose-response curves, reflecting decreased GABA affinity​ .

Mechanism:

  • GABAergic Disinhibition: Reduced chloride influx → Hyperexcitability → Epileptic seizures.

10. Diagnostic Tools

  • Genetic Testing:
    • Multiple gene panels (e.g., 48-gene epilepsy panel).
    • Whole-exome sequencing (WES) for broader identification.
  • EEG Findings:
    • Varied patterns: Generalized fast activity, multifocal spikes.
  • Neuroimaging:
    • MRI is often normal in GABRB3-related epileptic encephalopathy.

11. Therapeutic Implications

  • Current Management:
    • Antiepileptic drugs (AEDs): Sodium valproate, benzodiazepines.
    • Ketogenic diet
    • Seizure control remains challenging due to pharmacoresistance.
  • Future Directions:
    • Targeted therapies to restore GABA-A receptor function.
    • Precision medicine approaches involving GABA modulation.

12. Research Gaps and Future Work

  • Phenotypic Variability: Further studies to correlate mutation location with clinical severity.
  • Disease Mechanism: Functional studies on chloride conductance, trafficking.
  • Novel Therapies: Exploration of drugs targeting GABA-A receptor dysfunction in epileptic encephalopathies.

13. Conclusion

  • GABRB3 mutations are an emerging cause of severe epileptic encephalopathies with broad phenotypic overlap with developmental disorders like autism and Angelman syndrome.
  • GABRB3 mutations cause a spectrum of disorders from mild febrile seizures to severe epileptic encephalopathies.
  • The disease mechanism involves GABAergic disinhibition through loss of receptor function or reduced GABA sensitivity.
  • Advances in genetic testing allow early diagnosis and intervention.
  • Recurrent mutations like p.Y302C and p.R232Q highlight the pleiotropic nature of GABRB3 variants.
  • Advances in genetic sequencing will allow further identification and delineation of GABRB3-related disorders, improving diagnostic accuracy and paving the way for personalized therapies​

14. References

Papandreou A, McTague A, Trump N, Ambegaonkar G, Ngoh A, Meyer E etal (2016) GABRB3 mutations: a new and emerging cause of early infantile epileptic encephalopathy. Dev Med Child Neurol 58 (4):416-20. DOI: 10.1111/dmcn.12976 PMID: 26645412.

Absalom NL, Liao VWY, Johannesen KMH, Gardella E, Jacobs J, Lesca G etal (2022) Gain-of-function and loss-of-function GABRB3 variants lead to distinct clinical phenotypes in patients with developmental and epileptic encephalopathies. Nat Commun 13 (1):1822. DOI: 10.1038/s41467-022-29280-x PMID: 35383156.